温馨提示:需求数量不同,价格不同。请联系我们,确认当前新的报价!
ChromasPro用于将序列读数组装成contigs。有一个图形contig编辑器,显示对齐的色谱图。它还可以进行一般的序列分析,如限制性酶图谱、开放读码框搜索和BLAST提交。
ChromasPro适用于高达几兆的DNA序列组装项目,以及基本的序列编辑和分析。它能够组装来自Sanger测序仪(如ABI)和454和Illumina下一代测序仪的数据,如果有8GB内存的话,至多可组装1,000,000条序列。ChromasPro具有以下特点:
以Applied Biosystems .ab1, Staden Chromatogram (SCF and ZTR), 454 SFF, FASTA, FASTQ, EMBL, GenBank, SwissProt, GenPept, GCG RSF和纯文本格式打开序列。
以.ab1、.scf、.fasta和.fastq格式保存序列。
使用图形界面组装重叠的序列,生成共识,并突出显示模棱两可的地方供编辑。
使用质量数据自动去除低质量的序列,以提高序列组装。
使用参考序列作为组装的支架。
生成限制性位点和片段图,并列出切割、无切割和片段。
在G+C框架图的帮助下,绘制开放阅读框架图,并一键翻译ORFs。
打印色谱图、限制性位点和片段图以及开放阅读框架图。
通过NCBI网站进行核苷酸和蛋白质BLAST搜索。
通过与ClustalW对接进行多重比对。
反转和补充序列和色谱图。
通过准确匹配或optimal排列搜索序列。
在编辑核苷酸序列时显示翻译。
进行反向翻译并绘制核苷酸退化图。
绘制蛋白质的亲水性和抗原性。
复制色谱图部分的图像,以便粘贴到文档或演示文稿中。
系统要求:
与Windows 7sP1,8,10兼容
【英文介绍】
ChromasPro is for assembly of sequence reads into contigs, with a graphical contig editor which displays aligned chromatograms. It also peforms general sequence analysis such as restriction enzyme mapping, open-reading-frame searches, and BLAST submission.
ChromasPro is suitable for DNA sequence assembly projects up to a few megabases, and basic sequence editing and analysis. It is able to assemble data from Sanger sequencers such as ABI, and 454 and Illumina next-generation sequencers, with up to 1,000,000 sequences if 8 Gb RAM is available. ChromasPro has the following features:
Open sequences in Applied Biosystems .ab1, Staden Chromatogram (SCF and ZTR), 454 SFF, FASTA, FASTQ, EMBL, GenBank, SwissProt, GenPept, GCG RSF and plain text formats.
Save sequences in .ab1, .scf, .fasta and .fastq formats.
Assemble overlapping sequences using a graphical interface, generate a consensus and highlight ambiguities for editing.
Use quality data to automatically remove low quality sequence for improved sequence assembly.
Use a reference sequence as a scaffold for assembly.
Generate restriction site and fragment maps, and list cutters, non-cutters and fragments.
Map open reading frames, aided by a G+C frame plot, and translate ORFs with one click.
Print chromatograms, restriction site and fragment maps, and open reading frame maps.
Perform nucleotide and protein BLAST searches through the NCBI web site.
Perform multiple alignments by interfacing with ClustalW.
Reverse & complement sequences and chromatograms.
Search for sequences by exact matching or optimal alignment.
Display translations when editing nucleotide sequences.
Perform reverse translations and plot nucleotide degeneracy.
Plot hydrophilicity and antigenicity of proteins.
Copy an image of a chromatogram section for pasting into documents or presentations.